PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.342980.1
Common NameCsa_3G872110, LOC101222539
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 425aa    MW: 45888.1 Da    PI: 9.7711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.342980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-05175197223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg++F+  ++L+ H+ + H
  Cucsa.342980.1 175 PCPQCGEVFPKIESLELHQLVrH 197
                     7******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280174197IPR007087Zinc finger, C2H2
PROSITE profilePS501578.517174202IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-22199420No hitNo description
Gene3DG3DSA:3.90.228.106.4E-12201420IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MALLTNSFQD HKKPLSNKRR KKHPNPTPPP SSAQSSWDHI KNLITCKQVE VSRVQEPGKR  60
SPAYSKLGSS CSSICSFRDV VHGNAKVVHR ADNSPESSSV GQETRLLTRK SANGSSSRSL  120
TAPTPARTKN GGSGSASYNS SSSRGIQLRK LSGCYECHTI VDPSRLPIPR SSICPCPQCG  180
EVFPKIESLE LHQLVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDRPICKI ERILKVHNTQ  240
RTIQRFEDCR DAVKTRALGS TRKNPRCAAD GNELLRFHCS ALFCDLGSRG STGLCGSIPA  300
CGVCTVIRHG FQSKPGGPPG VRTTASSGRA HDSFDCGDGR RRAMLVCRVI AGRVKRISDD  360
AAATGTTTTT ATEEENVVSA AAAAASYDSV SRHSGMYSNL EELVIFNPKA ILPCFVVIYE  420
ALQT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136493.20.0PREDICTED: uncharacterized protein LOC101222539
TrEMBLA0A0A0LGH50.0A0A0A0LGH5_CUCSA; Uncharacterized protein
STRINGVIT_18s0001g14130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-156C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]